Fakultät für Informatik
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Technische Universität München
Lehrstuhl für Effiziente Algorithmen
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Clustering 16S rRNA for OTU prediction: A method of unsupervised Bayesian clustering
Xiaolin Hao
,
Rui Jiang
,
Ting Chen
Bioinformatics
27
(5), 2011, pp. 611-618
RseqFlow: Workflows for RNA-Seq data analysis
Ying Wang
,
Gaurang Mehta
,
Rajiv Mayani
,
Jingxi Lu
,
Tade Souaiaia
,
Yangho Chen
,
Andrew Clark
,
Hee Jae Yoon
,
Lin Wan
,
Oleg V. Evgrafov
,
James A. Knowles
,
Ewa Deelman
,
Ting Chen
Bioinformatics
27
(18), 2011, pp. 2598-2600
PerM: Efficient mapping of short sequencing reads with periodic full sensitive spaced seeds
Yangho Chen
,
Tade Souaiaia
,
Ting Chen
Bioinformatics
25
(19), 2009, pp. 2514-2521
Interval-valued fuzzy permutation method and experimental analysis on cardinal and ordinal evaluations
Ting-Yu Chen
,
Jih-Chang Wang
Journal of Computer and System Sciences
75
(7), 2009, pp. 371-387
Speeding up tandem mass spectrometry database search: Metric embeddings and fast near neighbor search
Debojyoti Dutta
,
Ting Chen
Bioinformatics
23
(5), 2007, pp. 612-618
An integrative approach for causal gene identification and gene regulatory pathway inference
Zhidong Tu
,
Li Wang
,
Michelle N. Arbeitman
,
Ting Chen
,
Fengzhu Sun
Bioinformatics
22
(14), 2006, pp. 489-496
Inference of missing SNPs and information quantity measurements for haplotype blocks
Shih-Chieh Su
,
C.-C. Jay Kuo
,
Ting Chen
Bioinformatics
21
(9), 2005, pp. 2001-2007
A hidden Markov model based scoring function for mass spectrometry database search
Yunhu Wan
,
Ting Chen
LNCS/LNBI
3500
, 2005, pp. 342-356
HapBlock: Haplotype block partitioning and tag SNP selection software using a set of dynamic programming algorithms
Kui Zhang
,
Zhaohui Qin
,
Ting Chen
,
Jun S. Liu
,
Michael S. Waterman
,
Fengzhu Sun
Bioinformatics
21
(1), 2005, pp. 131-134
Mapping gene ontology to proteins based on protein-protein interaction data
Minghua Deng
,
Zhidong Tu
,
Fengzhu Sun
,
Ting Chen
Bioinformatics
20
(6), 2004, pp. 895-902
Dynamic programming algorithms for haplotype block partitioning and tag SNP selection using haplotype data or genotype data
Kui Zhang
,
Ting Chen
,
Michael S. Waterman
,
Zhaohui S. Qin
,
Jun S. Liu
,
Fengzhu Sun
LNCS/LNBI
2983
, 2004, pp. 96-112
An integrated probabilistic model for functional prediction of proteins
Minghua Deng
,
Ting Chen
,
Fengzhu Sun
Proceedings of the 7th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2003 (Berlin, Germany, April 10-13, 2003)
, 2003, pp. 95-103
A suffix tree approach to the interpretation of tandem mass spectra: Applications to peptides of non-specific digestion and post-translational modifications
Bingwen Lu
,
Ting Chen
Bioinformatics
19
(S2), 2003, pp. 113-121
Dynamic programming algorithms for haplotype block partitioning: Applications to human chromosome 21 haplotype data
Kui Zhang
,
Fengzhu Sun
,
Michael S. Waterman
,
Ting Chen
Proceedings of the 7th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2003 (Berlin, Germany, April 10-13, 2003)
, 2003, pp. 332-340
Inferring domain-domain interactions from protein-protein interactions
Minghua Deng
,
Shipra Mehta
,
Fengzhu Sun
,
Ting Chen
Proceedings of the 6th Annual International Conference on Computational Molecular Biology, RECOMB'2002 (Washington, DC, USA, April 18-21, 2002)
, 2002, pp. 117-126
Identifying gene regulatory networks from experimental data
Ting Chen
,
Vladimir Filkov
,
Steven S. Skiena
Parallel Computing
27
(1-2), 2001, pp. 141-162
A case study in genome-level fragment assembly
Ting Chen
,
Steven S. Skiena
Bioinformatics
16
(6), 2000, pp. 494-500
Identifying gene regulatory networks from experimental data
Ting Chen
,
Vladimir Filkov
,
Steven S. Skiena
Proceedings of the 3rd Annual International Conference on Computational Molecular Biology, RECOMB'99 (Lyon, France, April 11-14, 1999)
, 1999, pp. 94-103
On the informational asymmetry betweeen upper and lower bounds for ultrametric evolutionary trees
Ting Chen
,
Ming-Yang Kao
Lecture Notes in Computer Science
1643
, 1999, pp. 248-256
Trie-based data structures for sequence assembly
Ting Chen
,
Steven S. Skiena
Lecture Notes in Computer Science
1264
, 1997, pp. 206-223
Sorting with fixed-length reversals
Ting Chen
,
Steven S. Skiena
Discrete Applied Mathematics
71
(1-3), 1996, pp. 269-295
Algorithms for identifying protein cross-links via tandem mass spectrometry
Ting Chen
,
Jacob D. Jaffe
,
George M. Church
Proceedings of the 5th Annual International Conference on Computational Molecular Biology, RECOMB'2001 (Montreal, Canada, April 22-25, 2001)
, pp. 95-102
Gene-finding via tandem mass spectrometry
Ting Chen
Proceedings of the 5th Annual International Conference on Computational Molecular Biology, RECOMB'2001 (Montreal, Canada, April 22-25, 2001)
, pp. 87-94