Fakultät für Informatik
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Technische Universität München
Lehrstuhl für Effiziente Algorithmen
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Ausgewählte Publikationen
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SmashCommunity: A metagenomic annotation and analysis tool
Manimozhiyan Arumugam
,
Eoghan D. Harrington
,
Konrad U. Foerstner
,
Jeroen Raes
,
Peer Bork
Bioinformatics
26
(23), 2010, pp. 2977-2978
SmashCell: A software framework for the analysis of single-cell amplified genome sequences
Eoghan D. Harrington
,
Manimozhiyan Arumugam
,
Jeroen Raes
,
Peer Bork
,
David A. Relman
Bioinformatics
26
(23), 2010, pp. 2979-2980
AQUA: Automated quality improvement for multiple sequence alignments
Jean Muller
,
Christopher J. Creevey
,
Julie D. Thompson
,
Detlev Arendt
,
Peer Bork
Bioinformatics
26
(2), 2010, pp. 263-265
Sircah: A tool for the detection and visualization of alternative transcripts
Eoghan D. Harrington
,
Peer Bork
Bioinformatics
24
(17), 2008, pp. 1959-1960
Interactive Tree Of Life (iTOL): An online tool for phylogenetic tree display and annotation
Ivica Letunic
,
Peer Bork
Bioinformatics
23
(1), 2007, pp. 127-128
Extraction of regulatory gene/protein networks from Medline
Jasmin S̑arić
,
Lars Juhl Jensen
,
Rossitza Ouzounova
,
Isabel Rojas
,
Peer Bork
Bioinformatics
22
(6), 2006, pp. 645-650
LSAT: Learning about alternative transcripts in MEDLINE
Parantu K. Shah
,
Peer Bork
Bioinformatics
22
(7), 2006, pp. 857-865
The WHy domain mediates the response to desiccation in plants and bacteria
Francesca D. Ciccarelli
,
Peer Bork
Bioinformatics
21
(8), 2005, pp. 1304-1307
Medusa: A simple tool for interaction graph analysis
Sean D. Hooper
,
Peer Bork
Bioinformatics
21
(24), 2005, pp. 4432-4433
Comparison of computational methods for the identification of cell cycle-regulated genes
Ulrik de Lichtenberg
,
Lars Juhl Jensen
,
Anders Fausbll
,
Thomas S. Jensen
,
Peer Bork
,
Sren Brunak
Bioinformatics
21
(7), 2005, pp. 1164-1171
Erratum to ''Comparison of computational methods for the identification of cell cycle-regulated genes''
Ulrik de Lichtenberg
,
Lars Juhl Jensen
,
Anders Fausbll
,
Thomas S. Jensen
,
Peer Bork
,
Sren Brunak
Bioinformatics
21
(13), 2005, pp. 3063-3063
Gene annotation from scientific literature using mappings between keyword systems
Antonio J. Pérez
,
Carolina Perez-Iratxeta
,
Peer Bork
,
Guillermo Thode
,
Miguel A. Andrade
Bioinformatics
20
(13), 2004, pp. 2084-2091
BLAST2GENE: A comprehensive conversion of BLAST output into independent genes and gene fragments
Mikita Suyama
,
David Torrents
,
Peer Bork
Bioinformatics
20
(12), 2004, pp. 1968-1970
Systematic discovery of analogous enzymes in thiamin biosynthesis
Jan Korbel
,
Enrique Morett
,
Emmanuvel Rajan
,
Gloria Saab-Rincon
,
Leticia Olvera
,
Maricela Olvera
,
Steffen Schmidt
,
Berend Snel
,
Peer Bork
misc
II
, 2003, pp. 61-62
A comprehensive set of protein complexes in yeast: Mining large scale protein-protein interaction screens
Roland Krause
,
Christian von Mering
,
Peer Bork
Bioinformatics
19
(15), 2003, pp. 1901-1908
Comparative analysis of protein interaction networks
Peer Bork
Bioinformatics
18
(S2), 2002, pp. 64-64
NAIL - Network Analysis Interface for Linking HMMER results
Luis Sánchez-Pulido
,
Yan P. Yuan
,
Miguel A. Andrade
,
Peer Bork
Bioinformatics
16
(7), 2000, pp. 656-657
Crystallographic threading
A. Ableson
,
J.I. Glasgow
Proceedings of the 7th International Conference on Intelligent Systems for Molecular Biology, ISMB'99 (Heidelberg, Germany, August 6-10, 1999)
, 1999, pp. 2-9
A phylogenetic approach to RNA structure prediction
Viatcheslav R. Akmaev
,
Scott T. Kelley
,
Gary D. Stormo
Proceedings of the 7th International Conference on Intelligent Systems for Molecular Biology, ISMB'99 (Heidelberg, Germany, August 6-10, 1999)
, 1999, pp. 10-17
Genomics via optical mapping III: Contiging genomic DNA
Thomas Anantharaman
,
Bud Mishra
,
David Schwartz
Proceedings of the 7th International Conference on Intelligent Systems for Molecular Biology, ISMB'99 (Heidelberg, Germany, August 6-10, 1999)
, 1999, pp. 18-27
Position-specific annotation of protein function based on multiple homologs
Miguel A. Andrade
Proceedings of the 7th International Conference on Intelligent Systems for Molecular Biology, ISMB'99 (Heidelberg, Germany, August 6-10, 1999)
, 1999, pp. 28-33
Nearest neighbor classification in 3D protein databases
Mihael Ankerst
,
Gabi Kastenmüller
,
Hans-Peter Kriegel
,
Thomas Seidl
Proceedings of the 7th International Conference on Intelligent Systems for Molecular Biology, ISMB'99 (Heidelberg, Germany, August 6-10, 1999)
, 1999, pp. 34-43
Reconstructing the duplication history of a tandem repeat
Gary Benson
,
Lan Dong
Proceedings of the 7th International Conference on Intelligent Systems for Molecular Biology, ISMB'99 (Heidelberg, Germany, August 6-10, 1999)
, 1999, pp. 44-53
Identity by descent genome segmentation based on single nucleotide polymorphism distributions
Thomas W. Blackwell
,
Eric Rouchka
,
David J. States
Proceedings of the 7th International Conference on Intelligent Systems for Molecular Biology, ISMB'99 (Heidelberg, Germany, August 6-10, 1999)
, 1999, pp. 54-59
Automatic extraction of biological information from scientific text: Protein-protein interactions
Christian Blaschke
,
Miguel A. Andrade
,
Christos Ouzounis
,
Alfonso Valencia
Proceedings of the 7th International Conference on Intelligent Systems for Molecular Biology, ISMB'99 (Heidelberg, Germany, August 6-10, 1999)
, 1999, pp. 60-67
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