Fakultät für Informatik
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Technische Universität München
Lehrstuhl für Effiziente Algorithmen
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Nebula - A web-server for advanced ChIP-seq data analysis
Valentina Boeva
,
Alban Lermine
,
Camille Barette
,
Christel Guillouf
,
Emmanuel Barillot
Bioinformatics
28
(19), 2012, pp. 2517-2519
Control-FREEC: A tool for assessing copy number and allelic content using next-generation sequencing data
Valentina Boeva
,
Tatiana Popova
,
Kevin Bleakley
,
Pierre Chiche
,
Julie Cappo
,
Gudrun Schleiermacher
,
Isabelle Janoueix-Lerosey
,
Olivier Delattre
,
Emmanuel Barillot
Bioinformatics
28
(3), 2012, pp. 423-425
ncPRO-seq: A tool for annotation and profiling of ncRNAs in sRNA-seq data
Chong-Jian Chen
,
Nicolas Servant
,
Joern Toedling
,
Alexis Sarazin
,
Antonin Marchais
,
Evelyne Duvernois-Berthet
,
Valérie Cognat
,
Vincent Colot
,
Olivier Voinnet
,
Edith Heard
,
Constance Ciaudo
,
Emmanuel Barillot
Bioinformatics
28
(23), 2012, pp. 3147-3149
HiTC: Exploration of high-throughput ``C'' experiments
Nicolas Servant
,
Bryan R. Lajoie
,
Elph`ege P. Nora
,
Luca Giorgetti
,
Chong-Jian Chen
,
Edith Heard
,
Job Dekker
,
Emmanuel Barillot
Bioinformatics
28
(21), 2012, pp. 2843-2844
Control-free calling of copy number alterations in deep-sequencing data using GC-content normalization
Valentina Boeva
,
Andrei Zinovyev
,
Kevin Bleakley
,
Jean-Philippe Vert
,
Isabelle Janoueix-Lerosey
,
Olivier Delattre
,
Emmanuel Barillot
Bioinformatics
27
(2), 2011, pp. 268-269
girafe - An R/Bioconductor package for functional exploration of aligned next-generation sequencing reads
Joern Toedling
,
Constance Ciaudo
,
Olivier Voinnet
,
Edith Heard
,
Emmanuel Barillot
Bioinformatics
26
(22), 2010, pp. 2902-2903
SVDetect: A tool to identify genomic structural variations from paired-end and mate-pair sequencing data
Bruno Zeitouni
,
Valentina Boeva
,
Isabelle Janoueix-Lerosey
,
Sophie Loeillet
,
Patricia Legoix-né
,
Alain Nicolas
,
Olivier Delattre
,
Emmanuel Barillot
Bioinformatics
26
(15), 2010, pp. 1895-1896
Classification of arrayCGH data using fused SVM
Franck Rapaport
,
Emmanuel Barillot
,
Jean-Philippe Vert
Bioinformatics
24
(13), 2008, pp. 375-382
ITALICS: An algorithm for normalization and DNA copy number calling for Affymetrix SNP arrays
Guillem Rigaill
,
Philippe Hupé
,
Anna Almeida
,
Philippe La Rosa
,
Jean-Philippe Meyniel
,
Charles Decraene
,
Emmanuel Barillot
Bioinformatics
24
(6), 2008, pp. 768-774
BiNoM: A Cytoscape plugin for manipulating and analyzing biological networks
Andrei Zinovyev
,
Eric Viara
,
Laurence Calzone
,
Emmanuel Barillot
Bioinformatics
24
(6), 2008, pp. 876-877
LICORN: Learning cooperative regulation networks from gene expression data
Mohamed Elati
,
Pierre Neuvial
,
Monique Bolotin-Fukuhara
,
Emmanuel Barillot
,
François Radvanyi
,
Céline Rouveirol
Bioinformatics
23
(18), 2007, pp. 2407-2414
Software package for automatic microarray image analysis (MAIA)
Eugene Novikov
,
Emmanuel Barillot
Bioinformatics
23
(5), 2007, pp. 639-640
VAMP: Visualization and analysis of array-CGH, transcriptome and other molecular profiles
Philippe La Rosa
,
Eric Viara
,
Philippe Hupé
,
Gaëlle Pierron
,
Stéphane Liva
,
Pierre Neuvial
,
Isabel Brito
,
Séverine Lair
,
Nicolas Servant
,
Nicolas Robine
,
Elodie Manié
,
Caroline Brennetot
,
Isabelle Janoueix-Lerosey
,
Virginie Raynal
,
Nadège Gruel
,
Céline Rouveirol
,
Nicolas Stransky
,
Marc-Henri Stern
,
Olivier Delattre
,
Alain Aurias
,
François Radvanyi
,
Emmanuel Barillot
Bioinformatics
22
(17), 2006, pp. 2066-2073
Selecting biomedical data sources according to user preferences
Sarah Cohen Boulakia
,
Séverine Lair
,
Nicolas Stransky
,
Stéphane Graziani
,
François Radvanyi
,
Emmanuel Barillot
,
Christine Froidevaux
Bioinformatics
20
(S1), 2004, pp. 86-93
Analysis of array CGH data: From signal ratio to gain and loss of DNA regions
Philippe Hupé
,
Nicolas Stransky
,
Jean-Paul Thiery
,
François Radvanyi
,
Emmanuel Barillot
Bioinformatics
20
(18), 2004, pp. 3413-3422
XML, bioinformatics and data integration
Frédéric Achard
,
Guy Vaysseix
,
Emmanuel Barillot
Bioinformatics
17
(2), 2001, pp. 115-125
The art of pedigree drawing: Algorithmic aspects
Frédéric Tores
,
Emmanuel Barillot
Bioinformatics
17
(2), 2001, pp. 174-179