Fakultät für Informatik
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Technische Universität München
Lehrstuhl für Effiziente Algorithmen
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Detecting approximate periodic patterns
Amihood Amir
,
Alberto Apostolico
,
Estrella Eisenberg
,
Gad M. Landau
,
Avivit Levy
,
Noa Lewenstein
Theoretical Computer Science
525
, 2014, pp. 60-67
Range LCP
Amihood Amir
,
Alberto Apostolico
,
Gad M. Landau
,
Avivit Levy
,
Moshe Lewenstein
,
Ely Porat
Journal of Computer and System Sciences
80
(7), 2014, pp. 1245-1253
A PTAS for the Square Tiling Problem
Amihood Amir
,
Alberto Apostolico
,
Gad M. Landau
,
Ely Porat
,
Oren Sar Shalom
Theoretical Computer Science
562
, 2014, pp. 33-45
Modulated string searching
Alberto Apostolico
,
Péter L. Erdŏs
,
István Miklós
,
Johannes Siemons
Theoretical Computer Science
525
, 2014, pp. 23-29
Forty years of text indexing
Alberto Apostolico
,
Maxime Crochemore
,
Martin Farach-Colton
,
Zvi Galil
,
S. Muthukrishnan
Lecture Notes in Computer Science
7922
, 2013, pp. 1-10
Parameterized searching with mismatches for run-length encoded strings
Alberto Apostolico
,
Péter L. Erdŏs
,
Alpár Jüttner
Theoretical Computer Science
454
, 2012, pp. 23-29
Range LCP
Amihood Amir
,
Alberto Apostolico
,
Gad M. Landau
,
Avivit Levy
,
Moshe Lewenstein
,
Ely Porat
Lecture Notes in Computer Science
7074
, 2011, pp. 683-692
Speedup for a periodic subgraph miner
Alberto Apostolico
,
Manuel Barbares
,
Cinzia Pizzi
Information Processing Letters
111
(11), 2011, pp. 521-523
Optimal extraction of irredundant motif bases
Alberto Apostolico
,
Claudia Tagliacollo
International Journal of Foundations of Computer Science
21
(6), 2010, pp. 1035-1047
The subsequence composition of a string
Alberto Apostolico
,
Fabio Cunial
Theoretical Computer Science
410
(43), 2009, pp. 4360-4371
Motif patterns in 2D
Alberto Apostolico
,
Laxmi Parida
,
Simona E. Rombo
Theoretical Computer Science
390
(1), 2008, pp. 40-55
Incremental discovery of the irredundant motif bases for all suffixes of a string in
O(n^2\log n)
time
Alberto Apostolico
,
Claudia Tagliacollo
Theoretical Computer Science
408
(2-3), 2008, pp. 106-115
Optimal offline extraction of irredundant motif bases
Alberto Apostolico
,
Claudia Tagliacollo
Lecture Notes in Computer Science
4598
, 2007, pp. 360-371
Fast gapped variants for Lempel-Ziv-Welch compression
Alberto Apostolico
Information and Computation
205
(7), 2007, pp. 1012-1026
10 years of the international conference on research in computational molecular biology (RECOMB)
Sarah J. Aerni
,
Eleazar Eskin
LNCS/LNBI
3909
, 2006, pp. 546-562
RNA secondary structure prediction via energy density minimization
Can Alkan
,
Emre Karakoc
,
S. Cenk Sahinalp
,
Peter Unrau
,
H. Alexander Ebhardt
,
Kaizhong Zhang
,
Jeremy Buhler
LNCS/LNBI
3909
, 2006, pp. 130-142
Motif Yggdrasil: Sampling from a tree mixture model
Samuel A. Andersson
,
Jens Lagergren
LNCS/LNBI
3909
, 2006, pp. 458-472
Efficient enumeration of phylogenetically informative substrings
Stanislav Angelov
,
Boulos Harb
,
Sampath Kannan
,
Sanjeev Khanna
,
Junhyong Kim
LNCS/LNBI
3909
, 2006, pp. 248-264
Sorting by weighted reversals, transpositions, and inverted transpositions
Martin Bader
,
Enno Ohlebusch
LNCS/LNBI
3909
, 2006, pp. 563-577
A new approach to protein identification
Nuno Bandeira
,
Dekel Tsur
,
Ari Frank
,
Pavel Pevzner
LNCS/LNBI
3909
, 2006, pp. 363-378
Clustering near-identical sequences for fast homology search
Michael Cameron
,
Yaniv Bernstein
,
Hugh E. Williams
LNCS/LNBI
3909
, 2006, pp. 175-189
Geometric Sieving: Automated distributed optimization of 3D motifs for protein function prediction
Brian Y. Chen
,
Viacheslav Y. Fofanov
,
Drew H. Bryant
,
Bradley D. Dodson
,
David M. Kristensen
,
Andreas M. Lisewski
,
Marek Kimmel
,
Olivier Lichtarge
,
Lydia E. Kavraki
LNCS/LNBI
3909
, 2006, pp. 500-515
Markov methods for hierarchical coarse-graining of large protein dynamics
Chakra Chennubhotla
,
Ivet Bahar
LNCS/LNBI
3909
, 2006, pp. 379-393
Predicting experimental quantities in protein folding kinetics using stochastic roadmap simulation
Tsung-Han Chiang
,
Mehmet Serkan Apaydin
,
Douglas L. Brutlag
,
David Hsu
,
Jean-Claude Latombe
LNCS/LNBI
3909
, 2006, pp. 410-424
Biological networks: Comparison, conservation, and evolutionary trees
Benny Chor
,
Tamir Tuller
LNCS/LNBI
3909
, 2006, pp. 30-44
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