Fakultät für Informatik
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Technische Universität München
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Tools for simulating and analyzing RNA folding kinetics
Xinyu Tang
,
Shawna Thomas
,
Lydia Tapia
,
Nancy M. Amato
LNCS/LNBI
4453
, 2007, pp. 268-282
Kinetics analysis methods for approximate folding landscapes
Lydia Tapia
,
Xinyu Tang
,
Shawna Thomas
,
Nancy M. Amato
Bioinformatics
23
(13), 2007, pp. 539-548
Simulating protein motions with rigidity analysis
Shawna Thomas
,
Xinyu Tang
,
Lydia Tapia
,
Nancy M. Amato
LNCS/LNBI
3909
, 2006, pp. 394-409
Using motion planning to study RNA folding kinetics
Xinyu Tang
,
Bonnie Kirkpatrick
,
Shawna Thomas
,
Guang Song
,
Nancy M. Amato
Proceedings of the 8th Annual International Conference on Research in Computational Molecular Biology, RECOMB'2004 (San Diego, CA, USA, March 27-31, 2004)
, 2004, pp. 252-261
Using motion planning to map protein folding landscapes and analyze folding kinetics of known native structures
Nancy M. Amato
,
Ken A. Dill
,
Guang Song
Proceedings of the 6th Annual International Conference on Computational Molecular Biology, RECOMB'2002 (Washington, DC, USA, April 18-21, 2002)
, 2002, pp. 2-11
Hindsight helps: Deterministic task scheduling with backtracking
Yueh-O Wang
,
Nancy M. Amato
,
D.K. Friesen
Proceedings of the 1997 International Conference on Parallel Processing, ICPP'97 (Bloomingdale, Ill., August 11-15, 1997)
, 1997, pp. 170-173
Computing faces in segment and simplex arrangements
Nancy M. Amato
,
Michael T. Goodrich
,
Edgar A. Ramos
Proceedings of the Twenty-Seventh Annual ACM Symposium on Theory of Computing, STOC'95 (Las Vegas, Nevada, USA, May 29 - June 1, 1995)
, 1995, pp. 672-682
Parallel algorithms for higher-dimensional convex hulls
Nancy M. Amato
,
Michael T. Goodrich
,
Edgar A. Ramos
Proceedings of the 35th Annual IEEE Symposium on Foundations of Computer Science, FOCS'94 (Santa Fe, New Mexico, November 20-22, 1994)
, 1994, pp. 683-694
Improved processor bounds for parallel algorithms for weighted directed graphs
Nancy Amato
Information Processing Letters
45
(3), 1993, pp. 147-152
An optimal algorithm for finding the separation of simple polygons
Nancy M. Amato
Proceedings of the 3rd Workshop on Algorithms and Data Structures. WADS '93 (Montréal, Canada, August 1993)
LNCS 709
, 1993, pp. 48-59
Reversing trains: A turn of the century sorting problem
Nancy Amato
,
Manuel Blum
,
Sandra Irani
,
Ronitt Rubinfeld
Journal of Algorithms
10
, 1989, pp. 413-428
Using motion planning to study protein folding pathways
Guang Song
,
Nancy M. Amato
Proceedings of the 5th Annual International Conference on Computational Molecular Biology, RECOMB'2001 (Montreal, Canada, April 22-25, 2001)
, pp. 287-296