Fakultät für Informatik
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Technische Universität München
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An assessment of substitution scores for protein profile-profile comparison
Xugang Ye
,
Guoli Wang
,
Stephen F. Altschul
Bioinformatics
27
(24), 2011, pp. 3356-3363
The effectiveness of position- and composition-specific gap costs for protein similarity searches
Aleksandar Stojmirović
,
E. Michael Gertz
,
Stephen F. Altschul
,
Yi-Kuo Yu
Bioinformatics
24
(13), 2008, pp. 15-23
A structure-based method for protein sequence alignment
Maricel G. Kann
,
Paul A. Thiessen
,
Anna R. Panchenko
,
Alejandro A. Schäffer
,
Stephen F. Altschul
,
Stephen H. Bryant
Bioinformatics
21
(8), 2005, pp. 1451-1456
The construction of amino acid substitution matrices for the comparison of proteins with non-standard compositions
Yi-Kuo Yu
,
Stephen F. Altschul
Bioinformatics
21
(7), 2005, pp. 902-911
IMPALA: Matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices
Alejandro A. Schäffer
,
Yuri I. Wolf
,
Chris P. Ponting
,
Eugene V. Koonin
,
L. Aravind
,
Stephen F. Altschul
Bioinformatics
15
(12), 1999, pp. 1000-1011
A Gibbs sampler for the detection of subtle motifs in multiple sequences
Charles E. Lawrence
,
Stephen F. Altschul
,
John C. Wootton
,
Mark S. Boguski
,
Andrew F. Neuwald
,
Jun S. Liu
Proceedings of the Twenty-Seventh Annual Hawaii International Conference on System Sciences, HICSS-27. Vol.~V: Biotechnology Computing (Wailea, Hawaii, January 4-7, 1994)
, 1994, pp. 245-254
Leaf pairs and tree dissections
Stephen F. Altschul
SIAM Journal on Discrete Mathematics
2
, 1989, pp. 293-299