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Technische Universität München
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Database indexing for production MegaBLAST searches
Aleksandr Morgulis
,
George Coulouris
,
Yan Raytselis
,
Thomas L. Madden
,
Richa Agarwala
,
Alejandro A. Schäffer
Bioinformatics
24
(16), 2008, pp. 1757-1764
Erratum to ``Database indexing for production MegaBLAST searches''
Aleksandr Morgulis
,
George Coulouris
,
Yan Raytselis
,
Thomas L. Madden
,
Richa Agarwala
,
Alejandro A. Schäffer
Bioinformatics
24
(24), 2008, pp. 2942-2942
COBALT: Constraint-based alignment tool for multiple protein sequences
Jason S. Papadopoulos
,
Richa Agarwala
Bioinformatics
23
(9), 2007, pp. 1073-1079
rh\_tsp\_map 3.0: End-to-end radiation hybrid mapping with improved speed and quality control
Alejandro A. Schäffer
,
Edward Stallknecht Rice
,
William Cook
,
Richa Agarwala
Bioinformatics
23
(9), 2007, pp. 1156-1158
Improved BLAST searches using longer words for protein seeding
Sergey A. Shiryev
,
Jason S. Papadopoulos
,
Alejandro A. Schäffer
,
Richa Agarwala
Bioinformatics
23
(21), 2007, pp. 2949-2951
WindowMasker: Window-based masker for sequenced genomes
Aleksandr Morgulis
,
E. Michael Gertz
,
Alejandro A. Schäffer
,
Richa Agarwala
Bioinformatics
22
(2), 2006, pp. 134-141
Inverse inbreeding coefficient problems with an application to linkage analysis of recessive diseases in inbred populations
Richa Agarwala
,
Leslie G. Biesecker
,
Alejandro A. Schäffer
Discrete Applied Mathematics
104
(1-3), 2000, pp. 3-44
Inverse inbreeding coefficient problems with an application to linkage analysis of recessive diseases in inbred populations
Richa Agarwala
,
Leslie G. Biesecker
,
Alejandro A. Schäffer
Proceedings of the 10th Annual ACM-SIAM Symposium on Discrete Algorithms, SODA'99 (Baltimore, Maryland, January 17-19, 1999)
, 1999, pp. 840-841
On the approximability of numerical taxonomy (fitting distances by tree metrics)
Richa Agarwala
,
Vineet Bafna
,
Martin Farach
,
Mike Paterson
,
Mikkel Thorup
SIAM Journal on Computing
28
(3), 1998-1999, pp. 1073-1085
Local rules for protein folding on a triangular lattice and generalized hydrophobicity in the HP model
Richa Agarwala
,
Serafim Batzoglou
,
Vlado Danc̑ík
,
Scott E. Decatur
,
Martin Farach
,
Sridhar Hannenhalli
,
S. Muthukrishnan
,
Steven Skiena
Proceedings of the 1st Annual International Conference on Computational Molecular Biology, RECOMB'97 (Santa Fe, New Mexico, January 20-23, 1997)
, 1997, pp. 1-2
Local rules for protein folding on a triangular lattice and generalized hydrophobicity in the HP model
Richa Agarwala
,
Serafim Batzoglou
,
Vlado Danc̑ik
,
Scott E. Decatur
,
Martin Farach
,
Sridhar Hannenhalli
,
Steven Skiena
Proceedings of the 8th Annual ACM-SIAM Symposium on Discrete Algorithms, SODA'97 (New Orleans, Louisiana, January 5-7, 1997)
, 1997, pp. 390-399
On the approximability of numerical taxonomy (fitting distances by tree metrics)
Richa Agarwala
,
Vineet Bafna
,
Martin Farach
,
Babu Narayanan
,
Mike Paterson
,
Mikkel Thorup
Proceedings of the 7th Annual ACM-SIAM Symposium on Discrete Algorithms, SODA'96 (Atlanta, Georgia, January 28-30, 1996)
, 1996, pp. 365-372
Simple algorithms for perfect phylogeny and triangulating colored graphs
Richa Agarwala
,
David Fernández-Baca
International Journal of Foundations of Computer Science
7
(1), 1996, pp. 11-21
Weighted multidimensional search and its application to convex optimization
Richa Agarwala
,
David Fernández-Baca
SIAM Journal on Computing
25
(1), 1996, pp. 83-99
Weighted search in the plane
Richa Agarwala
,
David Fernández-Baca
Information Processing Letters
54
, 1995, pp. 97-100
A polynomial-time algorithm for the perfect phylogeny problem when the number of character states is fixed
Richa Agarwala
,
David Fernández-Baca
SIAM Journal on Computing
23
(6), 1994, pp. 1216-1224
A polynomial-time algorithm for the perfect phylogeny problem when the number of character states is fixed
Richa Agarwala
,
David Fernández-Baca
Proceedings of the 34th Annual IEEE Symposium on Foundations of Computer Science, FOCS'93 (Palo Alto, CA, November 3-5, 1993)
, 1993, pp. 140-147
Solving the Lagrangian dual when the number of constraints is fixed
Richa Agarwala
,
David Fernández-Baca
Lecture Notes in Computer Science
652
, 1992, pp. 164-175